prn3p gfp burton (Addgene inc)
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prn3p gfp burton
Prn3p Gfp Burton, supplied by Addgene inc, used in various techniques. Bioz Stars score: 93/100, based on 6 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/prn3p+gfp+burton/pRN3P_membrane_EGFP+(Plasmid+%23139402)/pm40273908-333-11-9
Average 93 stars, based on 6 article reviews
Prn3p Gfp Burton, supplied by Addgene inc, used in various techniques. Bioz Stars score: 93/100, based on 6 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/prn3p+gfp+burton/pRN3P_membrane_EGFP+(Plasmid+%23139402)/pm40273908-333-11-9
Average 93 stars, based on 6 article reviews
prn3p gfp burton - by Bioz Stars,
2026-09
93/100 stars
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BAC Assay:Article Title: The establishment of nuclear organization in mouse embryos is orchestrated by multiple epigenetic pathways. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER End-It DNA end-repair kit Epicentre Cat#ER81050 QIAquick PCR purification kit Qiagen Cat#28104 AMPure RNA magnetic beads Beckman Coulter Cat#A63987 AMPure XP DNA magnetic beads Beckman Coulter Cat#A63881 Nextera XT Illumina Cat#15032354 NucleoBond BAC 100 kit Macherey-Nagel Cat#740579 Nick translation mix Roche Cat#10976776001 Deposited data Single-cell RNA-seq data of mouse oocytes and preimplantation embryos Ramsköld et al.49; Deng et al.50 GEO: GSE38495, GSE45719 ATAC-seq Wu et al.51 GEO: GSE66581 H3K4me3 ChIP data Zhang et al.52 GEO: GSE71434 H3K36me3 ChIP data Xu et al.53 GEO: GSE112834 H3K27ac ChIP data Dahl et al.54 GEO: GSE72784 H3K9me3 ChIP data Wang et al.33 GEO: GSE98149 H3K27me3 ChIP data Zheng et al.37 GEO: GSE76687 Pol2 Stacc-seq data Liu et al.55 GEO: GSE135457 DNaseI-seq data Lu et al.56 GEO: GSE76642 Hi-C data Du et al.57 GEO: GSE82185 Single-embryo RNA-seq (SMART-seq+50) Oomen et al.58 GEO: GSE225056 Embryo LaminB1 DamID data and Allelic LAD coordinates Borsos et al.24 GEO: GSE112551 a-amanitin treatment LaminB1 DamID data Pal et al.25 GEO: GSE241483 LaminB1 DamID This paper GEO: GSE244496 H3K9me3 CUT&RUN This paper GEO: GSE278718 H3K4me3 CUT&Tag This paper GEO: GSE278719 Single-embryo RNA-seq (SMART-seq+50) This paper GEO: GSE278720 Experimental models: Organisms/strains Mouse: F1 (C57BL/6J 3 CBA/H) females Janvier Labs MGI:5650652 Mouse: DBA/2J males Janvier Labs MGI:2684695 Oligonucleotides DamID Adapter_top: 5’-CTAATACGACT CACTATAGGGCAGCGTGGTCG CGGCCGAGGA-3’ Sigma Aldrich N/A DamID Adapter_bottom: 5’-TCCTCGGCCGCG-3’ Sigma Aldrich N/A Barcoded DamID PCR primers: 5’-NNNNNNBAR CODGTGGTCGCGGCCGAGGATC-3’ Sigma Aldrich N/A ERCC RNA spike in mix Invitrogen Cat#4456740 oligo-dT30V: 5’-AAGCAGTGGTATCA ACGCAGAGTACT30V-3’ Sigma Aldrich N/A TSO:5’-AAGCAGTGGTATCAACG CAGAGTACATrGrG+G-3’ TIB MolBiol N/A ISPCR oligo: 50-AAGCAGTGGTA TCAACGCAGAGT-30 Biomers.net N/A Illumina sequencing adaptor mix and primers IDT or Sigma Aldrich N/A Recombinant DNA pRN3P-AID-Dam-LaminB1 Borsos et al.24 N/A pRN3P-TIR1-3XMyc Borsos et al.24 Addgene #119766 pRN3P-EGFP-m6ATracer Borsos et al.24 Addgene #139403 (Continued on next page) ll OPEN ACCESS Cell 188, 1–20.e1–e9, June 26, 2025 e3 Please cite this article in press as: Pal et al., The establishment of nuclear organization in mouse embryos is orchestrated by multiple epigenetic pathways, Cell (2025), https://doi.org/10.1016/j.cell.2025.03.044 Resource .. REAGENT or RESOURCE SOURCE IDENTIFIER pRN3P-membrane-EGFP Borsos et al.24 Addgene #139402 Software:Article Title: The establishment of nuclear organization in mouse embryos is orchestrated by multiple epigenetic pathways. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER End-It DNA end-repair kit Epicentre Cat#ER81050 QIAquick PCR purification kit Qiagen Cat#28104 AMPure RNA magnetic beads Beckman Coulter Cat#A63987 AMPure XP DNA magnetic beads Beckman Coulter Cat#A63881 Nextera XT Illumina Cat#15032354 NucleoBond BAC 100 kit Macherey-Nagel Cat#740579 Nick translation mix Roche Cat#10976776001 Deposited data Single-cell RNA-seq data of mouse oocytes and preimplantation embryos Ramsköld et al.49; Deng et al.50 GEO: GSE38495, GSE45719 ATAC-seq Wu et al.51 GEO: GSE66581 H3K4me3 ChIP data Zhang et al.52 GEO: GSE71434 H3K36me3 ChIP data Xu et al.53 GEO: GSE112834 H3K27ac ChIP data Dahl et al.54 GEO: GSE72784 H3K9me3 ChIP data Wang et al.33 GEO: GSE98149 H3K27me3 ChIP data Zheng et al.37 GEO: GSE76687 Pol2 Stacc-seq data Liu et al.55 GEO: GSE135457 DNaseI-seq data Lu et al.56 GEO: GSE76642 Hi-C data Du et al.57 GEO: GSE82185 Single-embryo RNA-seq (SMART-seq+50) Oomen et al.58 GEO: GSE225056 Embryo LaminB1 DamID data and Allelic LAD coordinates Borsos et al.24 GEO: GSE112551 a-amanitin treatment LaminB1 DamID data Pal et al.25 GEO: GSE241483 LaminB1 DamID This paper GEO: GSE244496 H3K9me3 CUT&RUN This paper GEO: GSE278718 H3K4me3 CUT&Tag This paper GEO: GSE278719 Single-embryo RNA-seq (SMART-seq+50) This paper GEO: GSE278720 Experimental models: Organisms/strains Mouse: F1 (C57BL/6J 3 CBA/H) females Janvier Labs MGI:5650652 Mouse: DBA/2J males Janvier Labs MGI:2684695 Oligonucleotides DamID Adapter_top: 5’-CTAATACGACT CACTATAGGGCAGCGTGGTCG CGGCCGAGGA-3’ Sigma Aldrich N/A DamID Adapter_bottom: 5’-TCCTCGGCCGCG-3’ Sigma Aldrich N/A Barcoded DamID PCR primers: 5’-NNNNNNBAR CODGTGGTCGCGGCCGAGGATC-3’ Sigma Aldrich N/A ERCC RNA spike in mix Invitrogen Cat#4456740 oligo-dT30V: 5’-AAGCAGTGGTATCA ACGCAGAGTACT30V-3’ Sigma Aldrich N/A TSO:5’-AAGCAGTGGTATCAACG CAGAGTACATrGrG+G-3’ TIB MolBiol N/A ISPCR oligo: 50-AAGCAGTGGTA TCAACGCAGAGT-30 Biomers.net N/A Illumina sequencing adaptor mix and primers IDT or Sigma Aldrich N/A Recombinant DNA pRN3P-AID-Dam-LaminB1 Borsos et al.24 N/A pRN3P-TIR1-3XMyc Borsos et al.24 Addgene #119766 pRN3P-EGFP-m6ATracer Borsos et al.24 Addgene #139403 (Continued on next page) ll OPEN ACCESS Cell 188, 1–20.e1–e9, June 26, 2025 e3 Please cite this article in press as: Pal et al., The establishment of nuclear organization in mouse embryos is orchestrated by multiple epigenetic pathways, Cell (2025), https://doi.org/10.1016/j.cell.2025.03.044 Resource .. REAGENT or RESOURCE SOURCE IDENTIFIER pRN3P-membrane-EGFP Borsos et al.24 Addgene #139402 |